Example notebook

Example notebook#

import numpy as np
from anndata import AnnData
import knn_normalization

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
Cell In[1], line 4
      2 from anndata import AnnData
      3 import pandas as pd
----> 4 import knn_normalization

ModuleNotFoundError: No module named 'knn_normalization'

Running KNN normalization with an AnnData object (using neighbors from protein)#

adata = AnnData(np.random.normal(10, size=(100, 20)))

knn_normalization.tl.knn_normalize_protein(adata)

Implement a preprocessing function here.

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